| | Compiling...
HTSequencingLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(551) : warning C4100: 'dScale' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(733) : warning C4101: 'strTemp' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(727) : warning C4101: 'nt' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(727) : warning C4101: 'nj' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(727) : warning C4101: 'nk' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(727) : warning C4101: 'nx' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(736) : warning C4189: 'pCount' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1199) : warning C4189: 'dM' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1200) : warning C4189: 'dV' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1203) : warning C4189: 'dSum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1346) : warning C4100: 'nSampleNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1420) : warning C4100: 'nSampleNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1903) : warning C4101: 'dTotal' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1901) : warning C4101: 'dB' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1897) : warning C4101: 'dPro1' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1901) : warning C4101: 'dD' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1897) : warning C4101: 'dLam0' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1901) : warning C4101: 'dC' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1901) : warning C4101: 'dA' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1908) : warning C4101: 'dLike0' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1902) : warning C4101: 'dTemp2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1897) : warning C4101: 'dLam1' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1908) : warning C4101: 'dLike1' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1883) : warning C4101: 'nW2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1895) : warning C4189: 'nParamNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1882) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(1897) : warning C4101: 'dPro0' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(2491) : warning C4100: 'nSampleNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(2856) : warning C4189: 'little_endian_machine' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(2868) : warning C4189: 'nTotalProbeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(3201) : warning C4189: 'little_endian_machine' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\HTSequencingLib.c(3214) : warning C4189: 'nTotalProbeNum' : local variable is initialized but not referenced
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(2043) : warning C4701: local variable 'nPos2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(2060) : warning C4701: local variable 'nPos1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(2683) : warning C4701: local variable 'nj' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(2929) : warning C4701: local variable 'nAlnCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(3277) : warning C4701: local variable 'nAlnCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(5678) : warning C4701: local variable 'dMaxE' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(6350) : warning C4701: local variable 'nPosSide' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(7355) : warning C4701: local variable 'nNegChr' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\htsequencinglib.c(7594) : warning C4701: local variable 'nNegChr' may be used without having been initialized
Compiling...
WorkLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(1109) : warning C4189: 'nSiteNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2029) : warning C4100: 'dCutoff' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2055) : warning C4101: 'nP1' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2055) : warning C4101: 'nInitLen' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2054) : warning C4101: 'strSite' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2055) : warning C4101: 'nP2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2052) : warning C4101: 'nMisNum' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2048) : warning C4189: 'nSiteNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2537) : warning C4100: 'argc' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2537) : warning C4100: 'argv' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2770) : warning C4100: 'argv' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2772) : warning C4101: 'fpIn' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2835) : warning C4100: 'argc' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2835) : warning C4100: 'argv' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(2860) : warning C4189: 'nError' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(3503) : warning C4101: 'nk' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(3881) : warning C4101: 'nOK' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(3881) : warning C4101: 'nj' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(3881) : warning C4101: 'nk' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\WorkLib.c(3880) : warning C4101: 'nDest' : unreferenced local variable
TilingArrayLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(446) : warning C4018: '<' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(239) : warning C4100: 'strSpecies' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(769) : warning C4101: 'pPrevProbe' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(854) : warning C4100: 'strSpecies' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(1099) : warning C4189: 'nError' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(1058) : warning C4189: 'nTotalProbeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(1059) : warning C4189: 'nRealProbeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(2816) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(2824) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(2982) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(2996) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3029) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3043) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3089) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3103) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3140) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3154) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3189) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3203) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3264) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3278) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3312) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3326) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(2750) : warning C4100: 'nCELTotalY' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(2749) : warning C4100: 'vSampleAlias' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3665) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3679) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3712) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3726) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3772) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3786) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3823) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3837) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3872) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3886) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3947) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3961) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3995) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(4009) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3468) : warning C4100: 'nCELTotalY' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(3467) : warning C4100: 'vSampleAlias' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(4199) : warning C4100: 'nCELTotalY' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(4198) : warning C4100: 'vSampleAlias' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(8116) : warning C4100: 'strFCFile' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(8788) : warning C4100: 'strFCFile' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(9421) : warning C4100: 'strFCFile' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10722) : warning C4189: 'pRegionCTSumSort' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10705) : warning C4189: 'pPermGroupLabel' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10721) : warning C4189: 'pRegionCTMaxSid' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10719) : warning C4189: 'pRegionCT' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10720) : warning C4189: 'pRegionCTMaxSort' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10723) : warning C4189: 'pRegionCTSumSid' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(10706) : warning C4189: 'pOriGroupLabel' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(12413) : warning C4189: 'pCol' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(12623) : warning C4100: 'nLibId' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13124) : warning C4189: 'pRegionCTSumSort' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13107) : warning C4189: 'pPermGroupLabel' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13123) : warning C4189: 'pRegionCTMaxSid' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13121) : warning C4189: 'pRegionCT' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13122) : warning C4189: 'pRegionCTMaxSort' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13125) : warning C4189: 'pRegionCTSumSid' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(13108) : warning C4189: 'pOriGroupLabel' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(14409) : warning C4189: 'pCol' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(15956) : warning C4189: 'little_endian_machine' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\TilingArrayLib.c(15970) : warning C4189: 'nTotalProbeNum' : local variable is initialized but not referenced
StringLib.c
SequenceLib.c
RandomLib.c
PhysicalNetworkLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\PhysicalNetworkLib.c(444) : warning C4100: 'strMT' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\PhysicalNetworkLib.c(1519) : warning C4189: 'pNode' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\PhysicalNetworkLib.c(2573) : warning C4189: 'pEdge' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\PhysicalNetworkLib.c(2572) : warning C4189: 'pNode' : local variable is initialized but not referenced
MotifLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(37) : warning C4101: 'nlen' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(616) : warning C4101: 'strMotifFile' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1240) : warning C4100: 'vCSLike' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1240) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1240) : warning C4100: 'nUseCS' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1245) : warning C4101: 'nCSId' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1380) : warning C4100: 'vCSLike' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1380) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1380) : warning C4100: 'nUseCS' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1618) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1643) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(1640) : warning C4100: 'pFreqCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2138) : warning C4100: 'nIsRecording' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2137) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2137) : warning C4100: 'pMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2136) : warning C4100: 'vMotif' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2133) : warning C4100: 'nIndex' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2363) : warning C4100: 'nIsRecording' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2362) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2359) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2359) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2357) : warning C4100: 'pFreqCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2820) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2828) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2855) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2863) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(2775) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3398) : warning C4100: 'nIsRecording' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3397) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3394) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3394) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3392) : warning C4100: 'pFreqCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3965) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3979) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4001) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4016) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(3921) : warning C4100: 'pMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4139) : warning C4189: 'dL' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4367) : warning C4100: 'nIsRecording' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4366) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4363) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4363) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4361) : warning C4100: 'pFreqCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4772) : warning C4100: 'dDefaultPriorCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(4857) : warning C4100: 'pMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5072) : warning C4100: 'dDefaultPriorCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5071) : warning C4100: 'pMCount' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5075) : warning C4189: 'dL' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5290) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5289) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5787) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5620) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5619) : warning C4100: 'vMotif' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5619) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5618) : warning C4100: 'nHalfWin' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5616) : warning C4100: 'nBaseTypeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(5799) : warning C4100: 'nAddPos' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(6051) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(6050) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(6050) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(6049) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(6310) : warning C4100: 'pMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(6631) : warning C4101: 'strLine' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(7372) : warning C4101: 'nlen' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(7784) : warning C4189: 'dDefaultPriorCount' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8231) : warning C4100: 'pMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8480) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8316) : warning C4100: 'vCSLike' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8316) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8316) : warning C4100: 'nUseCS' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8315) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8314) : warning C4100: 'vMotif' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8313) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8313) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8508) : warning C4100: 'nIsRecording' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8507) : warning C4100: 'vCSLike' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8507) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8507) : warning C4100: 'nUseCS' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8504) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8504) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8690) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8689) : warning C4100: 'vMotif' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8689) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8884) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8810) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8809) : warning C4100: 'vMotif' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8809) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8807) : warning C4100: 'nBaseTypeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8900) : warning C4100: 'vCSLike' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8900) : warning C4100: 'nCSLikeNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8900) : warning C4100: 'nUseCS' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8899) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8898) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8897) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8896) : warning C4100: 'nBGOrder' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8970) : warning C4100: 'nIndex' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8978) : warning C4101: 'dTemp0' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(8978) : warning C4101: 'dTemp' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(9046) : warning C4100: 'pLogBG0' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(9670) : warning C4101: 'strTemp' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(9949) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(10383) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(11158) : warning C4189: 'nSeqCount' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(11875) : warning C4189: 'nBaseTypeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(12667) : warning C4189: 'nBaseTypeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(12660) : warning C4189: 'nEffecLen' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(12664) : warning C4189: 'dTotSite' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(12668) : warning C4189: 'nScale' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(12663) : warning C4189: 'dTotLen' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(12661) : warning C4189: 'nSiteNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(16894) : warning C4100: 'pBGR' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(17460) : warning C4100: 'pBGR' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(18870) : warning C4100: 'vMotifName' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(19495) : warning C4189: 'nBaseTypeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(20185) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(20236) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(20857) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(20964) : warning C4100: 'chStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(21917) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(22247) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(23212) : warning C4100: 'chStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(25775) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(25808) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(25868) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(25895) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(25927) : warning C4244: '=' : conversion from 'int' to 'unsigned char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(30589) : warning C4189: 'n2W' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MotifLib.c(30727) : warning C4100: 'nIndex' : unreferenced formal parameter
MicroarrayLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(3133) : warning C4100: 'nClassNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(5797) : warning C4100: 'nLocusNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(7880) : warning C4101: 'strProbe2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(7879) : warning C4101: 'strLine2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(7884) : warning C4101: 'fpInfo' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(7889) : warning C4101: 'nChrPos' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(7890) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(7881) : warning C4101: 'strProbe' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8157) : warning C4100: 'strGeneInfoFile' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8156) : warning C4100: 'pFDR' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8156) : warning C4100: 'pSortScore' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8154) : warning C4100: 'nOutputNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8183) : warning C4101: 'nWinCount' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8185) : warning C4101: 'dWinMin' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8180) : warning C4101: 'pRandSortId' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8178) : warning C4101: 'pRandMat' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8161) : warning C4101: 'nk' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8174) : warning C4101: 'chSep' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8184) : warning C4101: 'dWinMean' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8173) : warning C4101: 'vSF' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8165) : warning C4101: 'strProbe2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8164) : warning C4101: 'strLine2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8182) : warning C4101: 'nWinStart' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8179) : warning C4101: 'pRandSort' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8169) : warning C4101: 'fpInfo' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8187) : warning C4101: 'vPosVec' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8170) : warning C4101: 'nIncludeInfo' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8186) : warning C4101: 'dWinS2' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8166) : warning C4101: 'strProbe' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8555) : warning C4101: 'nPos' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(8554) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(9196) : warning C4100: 'dIntE' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(10327) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11158) : warning C4100: 'dIntE' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11219) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11682) : warning C4100: 'dGapDist' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11680) : warning C4100: 'pStationary' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11736) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11933) : warning C4100: 'dGapDist' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11941) : warning C4101: 'dSumF' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11939) : warning C4101: 'vBackwardSum' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11950) : warning C4101: 'nIgnore' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11940) : warning C4101: 'pDP' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11950) : warning C4101: 'nEndId' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11944) : warning C4101: 'nx' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11943) : warning C4101: 'dDist' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11941) : warning C4101: 'dSumB' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11938) : warning C4101: 'vForwardSum' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11942) : warning C4101: 'dMax' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11950) : warning C4101: 'nStartId' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(11941) : warning C4101: 'dSum' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(14588) : warning C4018: '<' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(14357) : warning C4100: 'nTotalY' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(15370) : warning C4101: 'strMAsumPath' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(16380) : warning C4100: 'dZeroCut' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(16377) : warning C4100: 'strGeneInfoFile' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(20958) : warning C4390: ';' : empty controlled statement found; is this the intent?
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(20961) : warning C4390: ';' : empty controlled statement found; is this the intent?
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MicroarrayLib.c(24630) : warning C4101: 'nj' : unreferenced local variable
MatrixLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MatrixLib.c(5201) : warning C4100: 'nlen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MatrixLib.c(5254) : warning C4100: 'nlen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MatrixLib.c(5575) : warning C4100: 'nlen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MatrixLib.c(5628) : warning C4100: 'nlen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MatrixLib.c(5829) : warning C4100: 'nlen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\MatrixLib.c(5882) : warning C4100: 'nlen' : unreferenced formal parameter
MathLib.c
GenomeLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(3025) : warning C4100: 'chStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(5109) : warning C4100: 'nWindowSize' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(5107) : warning C4100: 'pTargetChrSize' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(6287) : warning C4100: 'nChrSize' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(6285) : warning C4100: 'strChrName' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(7022) : warning C4100: 'nUseCS' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(7122) : warning C4189: 'nBaseTypeNum' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(9547) : warning C4189: 'pTempRefGene' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(9697) : warning C4189: 'nScaleFactor' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(9694) : warning C4189: 'pTempRefGene' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(9853) : warning C4189: 'nScaleFactor' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(9850) : warning C4189: 'pTempRefGene' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(10139) : warning C4100: 'chStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(11476) : warning C4100: 'chStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(11482) : warning C4189: 'nOptId' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(11483) : warning C4189: 'nOptDist' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(11630) : warning C4100: 'chStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(16191) : warning C4100: 'vOriginRefGene' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(16190) : warning C4100: 'vSpeciesMapbase' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(18458) : warning C4100: 'vSpeciesMapbase' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(20855) : warning C4189: 'pEdgeScore' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(21269) : warning C4101: 'strChr' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(22108) : warning C4101: 'fpIn' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\GenomeLib.c(22103) : warning C4101: 'nTemp' : unreferenced local variable
FlexModuleInterface_motif.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(29) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(28) : warning C4100: 'nAddStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(28) : warning C4100: 'nAddMotifId' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(28) : warning C4100: 'nAddPos' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(28) : warning C4100: 'nAddone' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(27) : warning C4100: 'pStrand' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(27) : warning C4100: 'pMotifId' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(26) : warning C4100: 'pPos' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(26) : warning C4100: 'nContextNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(46) : warning C4100: 'dT' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(46) : warning C4100: 'dModuleA' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(46) : warning C4100: 'dModuleL' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(45) : warning C4100: 'dModuleD' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(45) : warning C4100: 'dContextScore' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(66) : warning C4100: 'nIsRecording' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(65) : warning C4100: 'nMaxMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(65) : warning C4100: 'pMotifLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(64) : warning C4100: 'vMotif' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(63) : warning C4100: 'nModuleLen' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\FlexModuleInterface_motif.c(62) : warning C4100: 'nIndex' : unreferenced formal parameter
Alignment.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(1114) : warning C4100: 'pDataSeq' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(1114) : warning C4100: 'pSeedSeq' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(2410) : warning C4100: 'nClusterNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(2963) : warning C4100: 'vMotifName' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(2962) : warning C4100: 'vMotifSymbol' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(2962) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(3107) : warning C4100: 'vMotifName' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(3106) : warning C4100: 'vMotifSymbol' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(3106) : warning C4100: 'nMotifNum' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(3374) : warning C4189: 'vMotifFile' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(4946) : warning C4100: 'vSpeciesAnnot' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(4945) : warning C4100: 'vSpeciesCons' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(5718) : warning C4100: 'vMotifName' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\Alignment.c(5716) : warning C4100: 'vSpeciesName' : unreferenced formal parameter
AffyLib.c
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(1205) : warning C4101: 'pTarAlign' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(1209) : warning C4101: 'nAlignWritten' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(3761) : warning C4100: 'strProbeRefGeneMapFile' : unreferenced formal parameter
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(4238) : warning C4101: 'fdiff' : unreferenced local variable
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(5123) : warning C4244: '=' : conversion from 'int' to 'char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(5191) : warning C4244: '=' : conversion from 'int' to 'char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(5283) : warning C4244: '=' : conversion from 'int' to 'char', possible loss of data
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(7532) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(7533) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(7455) : warning C4189: 'nAlgorithmLength' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(7447) : warning C4189: 'little_endian_machine' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8694) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8717) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8766) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8792) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8817) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8862) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(8885) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9099) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9122) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9195) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9221) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9246) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9291) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9314) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9585) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9609) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9646) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9673) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9699) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9742) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(9766) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10027) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10051) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10088) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10115) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10141) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10184) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10208) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10493) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10516) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10571) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10597) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10622) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10667) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10690) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10940) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(10963) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(11042) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(11068) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(11093) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(11138) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(11161) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(12894) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(12929) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(12840) : warning C4189: 'little_endian_machine' : local variable is initialized but not referenced
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(13211) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(13416) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(13423) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(13546) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(13597) : warning C4389: '!=' : signed/unsigned mismatch
\work\Stanford\research\Wong\code_base\cisgenome_cfiles\AffyLib.c(13755) : warning C4018: '<' : signed/unsigned mismatch
Generating Code...
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(2773) : warning C4701: local variable 'nD1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(3199) : warning C4701: local variable 'nD1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(3471) : warning C4701: local variable 'nLastStart' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(5492) : warning C4701: local variable 'nWritePos' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(5687) : warning C4701: local variable 'nWritePos' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(527) : warning C4701: local variable 'pPrevAlign' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(1483) : warning C4701: local variable 'pPrevAlign' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(4123) : warning C4701: local variable 'fTemp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(4121) : warning C4701: local variable 'nTemp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(4543) : warning C4701: local variable 'fTemp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(4541) : warning C4701: local variable 'nTemp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(7582) : warning C4701: local variable 'nCols' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\affylib.c(7582) : warning C4701: local variable 'nRows' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(587) : warning C4701: local variable 'nSeqNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(2463) : warning C4701: local variable 'pPrev' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(2531) : warning C4701: local variable 'pRefPrev' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(2944) : warning C4701: local variable 'pRefPrev' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(7474) : warning C4701: local variable 'nQEnd' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(7475) : warning C4701: local variable 'nQStart' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(7485) : warning C4701: local variable 'nHEnd' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(7486) : warning C4701: local variable 'nHStart' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(7494) : warning C4701: local variable 'nA2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(7494) : warning C4701: local variable 'nA1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\alignment.c(1348) : warning C4701: local variable 'pPrev' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(880) : warning C4701: local variable 'nStart' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(892) : warning C4701: local variable 'nStep' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3680) : warning C4701: local variable 'nChrid' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6935) : warning C4701: local variable 'pCSCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6932) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(10353) : warning C4701: local variable 'nOptLen' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(13270) : warning C4701: local variable 'fpDestOut' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(13756) : warning C4701: local variable 'nAddNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(13709) : warning C4701: local variable 'nSwitchon' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18210) : warning C4701: local variable 'nD1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18219) : warning C4701: local variable 'nD2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18210) : warning C4701: local variable 'nE1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18219) : warning C4701: local variable 'nE2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18369) : warning C4701: local variable 'nD1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18378) : warning C4701: local variable 'nD2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18369) : warning C4701: local variable 'nE1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18378) : warning C4701: local variable 'nE2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18643) : warning C4701: local variable 'pCurrentRefGene' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19631) : warning C4701: local variable 'nStrandType' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19349) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19308) : warning C4701: local variable 'vSpeciesName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19315) : warning C4701: local variable 'vSpeciesSeqbase' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19329) : warning C4701: local variable 'vSpeciesConsbase' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19336) : warning C4701: local variable 'vSpeciesAnnotbase' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19317) : warning C4701: local variable 'vChrLen' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3903) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3909) : warning C4701: local variable 'vTag' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4034) : warning C4701: local variable 'nRefid' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4018) : warning C4701: local variable 'pChrSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3963) : warning C4701: local variable 'nCompNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3968) : warning C4701: local variable 'pCompPair' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3963) : warning C4701: local variable 'nk' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(3986) : warning C4701: local variable 'nWindowSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4034) : warning C4701: local variable 'nStepSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4835) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4841) : warning C4701: local variable 'vTag' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5060) : warning C4701: local variable 'nRefid' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5042) : warning C4701: local variable 'pChrSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5060) : warning C4701: local variable 'nTarid' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4971) : warning C4701: local variable 'pTargetChrSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4925) : warning C4701: local variable 'nCompNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4930) : warning C4701: local variable 'pCompPair' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4925) : warning C4701: local variable 'nk' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4948) : warning C4701: local variable 'nWindowSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(4973) : warning C4701: local variable 'nStepSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5060) : warning C4701: local variable 'vfpScore' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5060) : warning C4701: local variable 'nConserveWinSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5060) : warning C4701: local variable 'dMinPcutoff' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5953) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(5959) : warning C4701: local variable 'vTag' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6237) : warning C4701: local variable 'nRefid' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6220) : warning C4701: local variable 'pChrSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6237) : warning C4701: local variable 'nTarid' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6153) : warning C4701: local variable 'pTargetChrSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6069) : warning C4701: local variable 'vCondition' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6042) : warning C4701: local variable 'nk' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6134) : warning C4701: local variable 'chpn' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(6237) : warning C4701: local variable 'vfpScore' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(15880) : warning C4701: local variable 'fpDestOut' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(16952) : warning C4701: local variable 'nOrthoMatchId' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(16969) : warning C4701: local variable 'dOptMatchCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(16969) : warning C4701: local variable 'dOptOrienCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(19120) : warning C4701: local variable 'nStrandType' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18962) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18921) : warning C4701: local variable 'vSpeciesName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18928) : warning C4701: local variable 'vSpeciesSeqbase' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18942) : warning C4701: local variable 'vSpeciesConsbase' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18949) : warning C4701: local variable 'vSpeciesAnnotbase' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(18930) : warning C4701: local variable 'vChrLen' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(14375) : warning C4701: local variable 'nOrthoMatchId' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(14392) : warning C4701: local variable 'dOptMatchCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(14392) : warning C4701: local variable 'dOptOrienCount' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(15217) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(17348) : warning C4701: local variable 'nSpeciesNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\genomelib.c(17358) : warning C4701: local variable 'nRefIdConvert' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(3124) : warning C4701: local variable 'nResultType' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(3381) : warning C4701: local variable 'vSF' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(3570) : warning C4701: local variable 'vSF' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(3873) : warning C4701: local variable 'vSF' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4232) : warning C4701: local variable 'vAnnotation' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4198) : warning C4701: local variable 'vSF' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(6439) : warning C4701: local variable 'dignoremax' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(8115) : warning C4701: local variable 'vSF' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(13368) : warning C4701: local variable 'pMean' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(13416) : warning C4701: local variable 'pSD' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(14541) : warning C4701: local variable 'vSequenceFileOffset' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(14554) : warning C4701: local variable 'vGroupName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(14560) : warning C4701: local variable 'vVersionName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(14566) : warning C4701: local variable 'vParamNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(14569) : warning C4701: local variable 'vParamName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(14575) : warning C4701: local variable 'vParamValue' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(21427) : warning C4701: local variable 'nL1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(21425) : warning C4701: local variable 'nL2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(22351) : warning C4701: local variable 'pPrevAlign' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(23532) : warning C4701: local variable 'nLastEnd' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(23532) : warning C4701: local variable 'nLastStart' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(23532) : warning C4701: local variable 'nLastChr' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4675) : warning C4701: local variable 'dignoremax' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(5141) : warning C4701: local variable 'dignoremax' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(6152) : warning C4701: local variable 'nProbeNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(6152) : warning C4701: local variable 'dResolution' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(6152) : warning C4701: local variable 'nOutputNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7534) : warning C4701: local variable 'nArrayNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7574) : warning C4701: local variable 'nProbeNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7536) : warning C4701: local variable 'nClassNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7538) : warning C4701: local variable 'pDataClassID' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7702) : warning C4701: local variable 'nPairwiseComp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7667) : warning C4701: local variable 'dTruncLow' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7669) : warning C4701: local variable 'nTakeLog' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7849) : warning C4701: local variable 'nOutputNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7727) : warning C4701: local variable 'nFDRPermNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7756) : warning C4701: local variable 'nCycPermNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7739) : warning C4701: local variable 'nPermgroupNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7739) : warning C4701: local variable 'pPermgroupSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7739) : warning C4701: local variable 'vPermgroupMap' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7707) : warning C4701: local variable 'nVargroupNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7707) : warning C4701: local variable 'pVargroupSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(7707) : warning C4701: local variable 'vVargroupMap' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(12786) : warning C4701: local variable 'vCELPath' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(12789) : warning C4701: local variable 'vAlias' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(13811) : warning C4701: local variable 'vCELPath' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(13878) : warning C4701: local variable 'vAlias' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16779) : warning C4701: local variable 'nArrayNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16781) : warning C4701: local variable 'nClassNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16783) : warning C4701: local variable 'pDataClassID' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16945) : warning C4701: local variable 'nPairwiseComp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16951) : warning C4701: local variable 'nVargroupNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16951) : warning C4701: local variable 'pVargroupSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16951) : warning C4701: local variable 'vVargroupMap' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16992) : warning C4701: local variable 'pPermgroupSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(16992) : warning C4701: local variable 'vPermgroupMap' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(24315) : warning C4701: local variable 'nGP0' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(24316) : warning C4701: local variable 'nGP1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(24580) : warning C4701: local variable 'pFCorr' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(24581) : warning C4701: local variable 'pFDist' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(24582) : warning C4701: local variable 'pSortCorr' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(24583) : warning C4701: local variable 'pSortIndex' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(678) : warning C4701: local variable 'nArrayNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(718) : warning C4701: local variable 'nProbeNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(680) : warning C4701: local variable 'nClassNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(682) : warning C4701: local variable 'pDataClassID' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(839) : warning C4701: local variable 'nPairwiseComp' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(804) : warning C4701: local variable 'dTruncLow' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(806) : warning C4701: local variable 'nTakeLog' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(994) : warning C4701: local variable 'nOutputNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(864) : warning C4701: local variable 'nFDRPermNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(901) : warning C4701: local variable 'nCycPermNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(884) : warning C4701: local variable 'nPermgroupNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(884) : warning C4701: local variable 'pPermgroupSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(884) : warning C4701: local variable 'vPermgroupMap' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(844) : warning C4701: local variable 'nVargroupNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(844) : warning C4701: local variable 'pVargroupSize' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(844) : warning C4701: local variable 'vVargroupMap' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4397) : warning C4701: local variable 'nProbeNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4397) : warning C4701: local variable 'dResolution' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4397) : warning C4701: local variable 'nMaxIter' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4397) : warning C4701: local variable 'dConvth' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(4397) : warning C4701: local variable 'nOutputNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(22007) : warning C4701: local variable 'nError' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(22026) : warning C4701: local variable 'nArrayNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(22026) : warning C4701: local variable 'dTruncLow' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(22026) : warning C4701: local variable 'nTakeLog' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\microarraylib.c(22026) : warning C4701: local variable 'dCVCutoff' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(6119) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(13550) : warning C4701: local variable 'nj' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(13742) : warning C4701: local variable 'nj' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(16563) : warning C4701: local variable 'pMask' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(17082) : warning C4701: local variable 'dScore' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(17648) : warning C4701: local variable 'dScore' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(19422) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(20915) : warning C4701: local variable 'dProb' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(30106) : warning C4701: local variable 'nETail' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(30117) : warning C4701: local variable 'nDTail' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(30089) : warning C4701: local variable 'pEle2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(30628) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(2159) : warning C4701: local variable 'nNewModuleLen' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(2268) : warning C4701: local variable 'pPrevSite' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(7089) : warning C4701: local variable 'nSeqId' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(9178) : warning C4706: assignment within conditional expression
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(10632) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(10750) : warning C4701: local variable 'dScore' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(13848) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(18002) : warning C4701: local variable 'chp2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(20750) : warning C4701: local variable 'nx' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(22035) : warning C4701: local variable 'dHMMMax' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(22278) : warning C4701: local variable 'dHMMMax' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(2547) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(3565) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(4534) : warning C4701: local variable 'pCS' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(14465) : warning C4701: local variable 'dLower' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(14465) : warning C4701: local variable 'dUpper' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\motiflib.c(7696) : warning C4701: local variable 'nError' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\physicalnetworklib.c(830) : warning C4701: local variable 'nHID' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(231) : warning C4701: local variable 'd_rand' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(472) : warning C4701: local variable 'Y' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(455) : warning C4701: local variable 'X' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(503) : warning C4701: local variable 'dgamma' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(709) : warning C4701: local variable 'Y' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(692) : warning C4701: local variable 'X' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(722) : warning C4701: local variable 'dgamma' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(822) : warning C4701: local variable 'Y' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\randomlib.c(806) : warning C4701: local variable 'X' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(748) : warning C4701: local variable 'pCUnit' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(1788) : warning C4702: unreachable code
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(2237) : warning C4701: local variable 'vSequenceFileOffset' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(3428) : warning C4701: local variable 'nidx2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(4098) : warning C4701: local variable 'nidx2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(4343) : warning C4701: local variable 'nidx2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(8276) : warning C4701: local variable 'nClustId' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(8953) : warning C4701: local variable 'nClustId' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(16640) : warning C4701: local variable 'chSep2' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(400) : warning C4701: local variable 'vSequenceFileOffset' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(412) : warning C4701: local variable 'vGroupName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(418) : warning C4701: local variable 'vVersionName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(424) : warning C4701: local variable 'vParamNum' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(427) : warning C4701: local variable 'vParamName' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(433) : warning C4701: local variable 'vParamValue' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(9588) : warning C4701: local variable 'nClustId' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(1297) : warning C4701: local variable 'vCELPath' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(1302) : warning C4701: local variable 'vArrayPath' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(1286) : warning C4701: local variable 'vAlias' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(1485) : warning C4701: local variable 'pNumMaskCells' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\tilingarraylib.c(1532) : warning C4701: local variable 'pSortMean' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\worklib.c(268) : warning C4701: local variable 'nD1' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\worklib.c(4340) : warning C4701: local variable 'nz' may be used without having been initialized
c:\work\stanford\research\wong\code_base\cisgenome_cfiles\worklib.c(4935) : warning C4701: local variable 'nz' may be used without having been initialized
Creating library...
Performing Post-Build Event...
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